BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB005B08SP1|AL425334
(990 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1530 1825 0.0
3x_Contig66 785 0.0
>3x_Contig1530
Length = 6216
Score = 1825 bits (918), Expect = 0.0
Identities = 959/970 (98%), Gaps = 6/970 (0%)
Strand = Plus / Minus
Query: 1 gatcgttaattgcagcwagcgacggtctacaagagacctaccaaggccgtctacgatcta 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 4134 gatcgttaattgcagcaagcgacggtctacaagagacctaccaaggccgtctacgaca-- 4077
Query: 61 taggcccgcaagcagtccgtcccaccgagcaagcccagtaagacagtccacaagcatkcc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4076 -aggcccgcaagcagtccgtcccaccgagcaagcccagtaagacagtccacaagcatgcc 4018
Query: 121 cgccgcgtctgaccaaggccctcactgcccgatccttagagccaatccttatcccgaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4017 cgccgcgtctgaccaaggccctcactgcccgatccttagagccaatccttatcccgaagt 3958
Query: 181 tacggatctattttgccgacttcccttatctacattattctatcaactagaggctgttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3957 tacggatctattttgccgacttcccttatctacattattctatcaactagaggctgttca 3898
Query: 241 ccttggagacctgctgcggttatcagtacgacctggcatgaaaactattccttcctgtgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3897 ccttggagacctgctgcggttatcagtacgacctggcatgaaaactattccttcctgtgg 3838
Query: 301 attttcaagggccgtcgcgggcgcaccggacccagcacaagggctgggctcttccagcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3837 attttcaagggccgtcgcgggcgcaccggacccagcacaagggctgggctcttccagcca 3778
Query: 361 taagaccccctctccggataaaccaattccggggtgataagctgttaagaagaaaagata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3777 taagaccccctctccggataaaccaattccggggtgataagctgttaagaagaaaagata 3718
Query: 421 actcctcccagggctcgcgccgacgtctccacattcagttacgttaccgtgaagaatcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3717 actcctcccagggctcgcgccgacgtctccacattcagttacgttaccgtgaagaatcca 3658
Query: 481 tatccaggttccggaatattaaccggattccctttcgatggtggcctagaaaattaggcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3657 tatccaggttccggaatattaaccggattccctttcgatggtggcctagaaaattaggcc 3598
Query: 541 tttgaaacggagcttccccatctcttaggatcgactaacccacgtccaactgctgttgac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3597 tttgaaacggagcttccccatctcttaggatcgactaacccacgtccaactgctgttgac 3538
Query: 601 gtggaacctttccccacttcagtcttcaaagttctcatttgaatatttgctactaccacc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3537 gtggaacctttccccacttcagtcttcaaagttctcatttgaatatttgctactaccacc 3478
Query: 661 aagatctgcactagaggccgttctacccagctttacagcctaggcttcgtcactgacctc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3477 aagatctgcactagaggccgttctacccagctttacagcctaggcttcgtcactgacctc 3418
Query: 721 cacgcctgcctactcgtcagggcatcatattaaccctgacggtggagtataggtaacacg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3417 cacgcctgcctactcgtcagggcatcatattaaccctgacggtggagtataggtaacacg 3358
Query: 781 cttgagcgccatccattttcagggctagttcattcggccggtgagttgttacacactcct 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3357 cttgagcgccatccattttcagggctagttcattcggccggtgagttgttacacactcct 3298
Query: 841 tagcggattccgacttccatggccaccgtccggctgtctagatgaactaacaccttttgt 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3297 tagcggattccgacttccatggccaccgtccggctgtctagatgaactaacaccttttgt 3238
Query: 901 ggtgtctgatgagcgtgtattcc-gsaccttaactccacgttcggttcat-ccgcatcg- 957
||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||
Sbjct: 3237 ggtgtctgatgagcgtgtattccggcaccttaactccacgttcggttcatcccgcatcgc 3178
Query: 958 cagttctgct 967
||||||||||
Sbjct: 3177 cagttctgct 3168
>3x_Contig66
Length = 1023
Score = 785 bits (395), Expect = 0.0
Identities = 414/421 (98%), Gaps = 3/421 (0%)
Strand = Plus / Plus
Query: 1 gatcgttaattgcagcwagcgacggtctacaagagacctaccaaggccgtctacgatcta 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gatcgttaattgcagcaagcgacggtctacaagagacctaccaaggccgtctacgaca-- 121
Query: 61 taggcccgcaagcagtccgtcccaccgagcaagcccagtaagacagtccacaagcatkcc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 122 -aggcccgcaagcagtccgtcccaccgagcaagcccagtaagacagtccacaagcatgcc 180
Query: 121 cgccgcgtctgaccaaggccctcactgcccgatccttagagccaatccttatcccgaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgccgcgtctgaccaaggccctcactgcccgatccttagagccaatccttatcccgaagt 240
Query: 181 tacggatctattttgccgacttcccttatctacattattctatcaactagaggctgttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tacggatctattttgccgacttcccttatctacattattctatcaactagaggctgttca 300
Query: 241 ccttggagacctgctgcggttatcagtacgacctggcatgaaaactattccttcctgtgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccttggagacctgctgcggttatcagtacgacctggcatgaaaactattccttcctgtgg 360
Query: 301 attttcaagggccgtcgcgggcgcaccggacccagcacaagggctgggctcttccagcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attttcaagggccgtcgcgggcgcaccggacccagcacaagggctgggctcttccagcca 420
Query: 361 taagaccccctctccggataaaccaattccggggtgataagctgttaagaagaaaagata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taagaccccctctccggataaaccaattccggggtgataagctgttaagaagaaaagata 480
Query: 421 a 421
|
Sbjct: 481 a 481
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3694
Number of Sequences: 1807
Number of extensions: 3694
Number of successful extensions: 25
Number of sequences better than 1.0e-20: 2
length of query: 990
length of database: 10,358,551
effective HSP length: 16
effective length of query: 974
effective length of database: 10,329,639
effective search space: 10061068386
effective search space used: 10061068386
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.9 bits)